• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

留言板

尊敬的读者、作者、审稿人, 关于本刊的投稿、审稿、编辑和出版的任何问题, 您可以本页添加留言。我们将尽快给您答复。谢谢您的支持!

姓名
邮箱
手机号码
标题
留言内容
验证码

基于形态标记与SRAP标记的莱豆种质资源遗传多样性分析

郭媛贞 黄强 叶新如 陈芝 黄枝 陈海玲 颜墩炜 薛珠政

郭媛贞,黄强,叶新如,等. 基于形态标记与SRAP标记的莱豆种质资源遗传多样性分析 [J]. 福建农业学报,2023,38(2):166−173 doi: 10.19303/j.issn.1008-0384.2023.02.006
引用本文: 郭媛贞,黄强,叶新如,等. 基于形态标记与SRAP标记的莱豆种质资源遗传多样性分析 [J]. 福建农业学报,2023,38(2):166−173 doi: 10.19303/j.issn.1008-0384.2023.02.006
GUO Y Z, HUANG Q, YE X R, et al. Morphological and SRAP Markers-based Genetic Diversity Determination on Phaseolus lunatus L. Germplasms [J]. Fujian Journal of Agricultural Sciences,2023,38(2):166−173 doi: 10.19303/j.issn.1008-0384.2023.02.006
Citation: GUO Y Z, HUANG Q, YE X R, et al. Morphological and SRAP Markers-based Genetic Diversity Determination on Phaseolus lunatus L. Germplasms [J]. Fujian Journal of Agricultural Sciences,2023,38(2):166−173 doi: 10.19303/j.issn.1008-0384.2023.02.006

基于形态标记与SRAP标记的莱豆种质资源遗传多样性分析

doi: 10.19303/j.issn.1008-0384.2023.02.006
基金项目: 福建省科技计划引导性项目(2020N0044)
详细信息
    作者简介:

    郭媛贞(1968−),女,硕士,副研究员,研究方向:蔬菜育种、栽培(E-mail:ptnksgyz@163.com

    通讯作者:

    薛珠政(1971−),男,研究员,研究方向:蔬菜育种与栽培技术研究(E-mail:369654817@qq.com

  • 中图分类号: S643

Morphological and SRAP Markers-based Genetic Diversity Determination on Phaseolus lunatus L. Germplasms

  • 摘要:   目的  探明莱豆种质资源遗传多样性和亲缘关系,为莱豆种质资源优良基因深度发掘和新品种选育提供科学依据。  方法  利用形态标记和SRAP分子标记两种方法对22份莱豆资源的26个数量性状和 18个质量性状进行测定、分析。  结果  筛选出的28对SRAP引物扩增多态性条带158条,平均多态性比率为77.75%。两种标记方法聚类结果显示,根据莱豆荚果大小可以将22份莱豆资源分为三大类群体。其中,“上横山10-2-6”和“下横山10-3-3”亲缘关系较近,推测可能存在频繁的基因交流。  结论  22份莱豆资源遗传多样性丰富,形态标记和SRAP分子标记两种聚类方法基本支持根据荚果大小划分莱豆资源,为莱豆种质资源的创新利用奠定基础。
  • 图  1  莱豆农艺性状的聚类分析

    Figure  1.  Cluster analysis on agronomic traits of P. lunatus

    图  2  SRAP引物对莱豆的扩增结果

    Figure  2.  Amplified primer

    图  3  22份莱豆聚类图

    Figure  3.  Dendrogram of 22 P. lunatus germplasms

    表  1  供试莱豆种质资源

    Table  1.   P. lunatus germplasms studied

    编号 Code材料名称 Name原产地 Orign编号 Code材料名称 Name原产地 Orign
    1铁灶本莆田市城厢区霞林办铁灶村12DJ-11-3-1-1莆田市仙游县大济镇
    2莆1046莆田市荔城区新度镇渠桥村13FT-08-2-5-3莆田市仙游县枫亭镇
    3JD-1603莆田市荔城区黄石镇清前村14DW17-1-5莆田市仙游县度尾镇
    4莆莱1号莆田市农科所选育1514LD-5-2-7莆田市仙游县赖店镇
    5龙莱1号龙岩市龙津作物所选育16DW15-6-1莆田市仙游县度尾镇
    6QC12-1-17-3莆田市荔城区新度镇青垞村17小莱豆16-5-6莆田市城厢区常太镇
    7QC12-2-6-5莆田市荔城区新度镇青垞村18小莱豆16-21-11莆田市城厢区常太镇
    8横山10-1—1莆田市荔城区新度镇横山村19中莱16-12-5莆田市新度镇渠桥村
    9上横山10-2-6莆田市荔城区新度镇横山村20武平黑花籽扁豆龙岩市武平县
    10下横山10-3-3莆田市荔城区新度镇横山村21PLQQ-08-2-6莆田市荔城区新度镇渠桥村
    11新周13-6-2-7莆田市仙游县园庄镇新周村22PLQQ-08-5-3莆田市荔城区新度镇渠桥村
    下载: 导出CSV

    表  2  SRAP分析所用的引物序列

    Table  2.   Primer sequences used in SRAP analysis

    编号Code上游引物序列(5′-3′)Upstream primer sequences下游引物序列(5′-3′)Downstream primer sequences
    me1em20TGAGTCCAAACCGGATAGACTGCGTACGAATTCAG
    me2em13TGAGTCCAAACCGGAGCGACTGCGTACGAATTGGT
    me2em20TGAGTCCAAACCGGAGCGACTGCGTACGAATTCAG
    me4em2TGAGTCCAAACCGGACCGACTGCGTACGAATTTGC
    me4em4TGAGTCCAAACCGGACCGACTGCGTACGAATTTGA
    me4em11TGAGTCCAAACCGGACCGACTGCGTACGAATTTCG
    me5em2TGAGTCCAAACCGGAAGGACTGCGTACGAATTTGC
    me5em8TGAGTCCAAACCGGAAGGACTGCGTACGAATTCTG
    me5em13TGAGTCCAAACCGGAAGGACTGCGTACGAATTGGT
    me6em2TGAGTCCAAACCGGTAAGACTGCGTACGAATTTGC
    me6em3TGAGTCCAAACCGGTAAGACTGCGTACGAATTGAC
    me7em12TGAGTCCAAACCGGTCCGACTGCGTACGAATTGTC
    me8em2TGAGTCCAAACCGGTGCGACTGCGTACGAATTTGC
    me8em4TGAGTCCAAACCGGTGCGACTGCGTACGAATTTGC
    me8em11TGAGTCCAAACCGGTGCGACTGCGTACGAATTTCG
    me10em2TGGGGACAACCCGGCTTGACTGCGTACGAATTTGC
    me10em3TGGGGACAACCCGGCTTTGAGTCCAAACCGGAAT
    me10em4TGGGGACAACCCGGCTTTGAGTCCAAACCGGACC
    me11em4TGGGGACAACCCGGTTCTGAGTCCAAACCGGACC
    me11em7TGGGGACAACCCGGTTCGACTGCGTACGAATTATG
    me12em4TGGGGACAACCCGGTAGGACTGCGTACGAATTTGA
    me13em1TGGGGACAACCCGGTCAGACTGCGTACGAATTAAT
    me13em3TGGGGACAACCCGGTCATGAGTCCAAACCGGAAT
    me13em9TGGGGACAACCCGGTCAGACTGCGTACGAATTACG
    me13em14TGGGGACAACCCGGTCAGACTGCGTACGAATTCAG
    me13em15TGGGGACAACCCGGTCAGACTGCGTACGAATTCTG
    me14em1TGGGGACAACCCGGTGTGACTGCGTACGAATTAAT
    me14em3TGGGGACAACCCGGTGTGACTGCGTACGAATTGAC
    下载: 导出CSV

    表  3  莱豆种质资源数量性状

    Table  3.   Quantifiable traits of P. lunatus

    品种编号Variety code第一对真叶First pair of true leaves顶端小叶Top lobule主蔓粗Main stem diamete/cm鲜荚fresh pods鲜豆百粒重hundred-grain weight of frsh bean/g干荚Dry pods干豆百粒重hundred-grain weight of dry bean/g
    真叶长True leaf length/cm真叶宽True leaf width/cm叶长Leaf length/cm叶宽Leaf width/cm叶柄长Petiole length/cm叶柄粗Petiole thickness/mm荚长Pod length/cm荚宽Pod width/cm荚重Pod weight/g荚粒数pod seednumber荚长Pod length/cm荚宽Pod length/cm荚重Pod weight/g荚粒数pod seed number
    19.399.1011.187.709.102.331.2310.742.7912.662.61312.2110.782.504.922.40155.08
    27.756.4310.827.029.472.221.3910.142.7513.452.62349.1711.152.325.552.60163.73
    38.488.0810.726.2210.322.001.3010.692.5612.812.53313.8015.692.245.082.50155.24
    48.797.3112.116.8711.272.041.4711.442.9219.173.00374.3011.332.417.562.50175.80
    58.748.1810.376.589.982.001.6310.142.6314.422.50356.629.782.495.862.60167.58
    68.578.8310.386.128.951.841.2610.772.7211.492.35311.3811.682.375.622.90150.83
    78.789.1910.025.678.921.831.3310.442.6910.692.45330.7711.612.515.623.00136.77
    87.218.0712.276.9211.211.971.5111.882.6615.062.88373.2211.632.386.803.00179.93
    910.489.5410.446.329.592.511.3411.502.5512.502.80320.5010.292.074.432.50136.68
    1010.179.2011.617.289.931.991.3510.422.9411.192.40333.0510.102.384.052.40129.67
    119.418.5312.156.6710.111.991.6910.572.7011.382.55333.3311.192.395.562.80160.96
    128.779.0311.626.4711.361.971.8911.182.7612.242.63364.3911.332.606.363.00170.63
    138.017.3010.686.3610.201.941.3111.062.5813.112.80307.2610.502.265.242.50165.52
    148.407.7711.756.7810.321.881.6611.343.0014.172.42363.4511.122.425.192.50157.92
    159.438.0112.457.0911.121.931.3712.562.8217.172.90335.0311.632.285.372.45161.52
    165.288.2611.316.259.231.901.6311.202.6614.092.60351.2010.072.247.292.40136.75
    1710.237.046.505.676.251.480.927.251.474.712.85104.617.531.472.612.8555.19
    189.797.586.946.089.371.691.037.231.444.673.0599.617.391.452.662.8057.20
    199.047.166.785.546.331.401.017.091.664.322.7093.977.301.652.292.7554.67
    209.477.999.246.798.891.711.027.561.936.473.30128.356.811.552.262.7057.59
    218.938.6210.886.3512.612.281.7712.062.7417.622.80417.1111.732.495.932.60167.46
    228.988.3811.197.1012.542.151.8513.102.7719.623.09411.3412.022.336.723.00169.70
    下载: 导出CSV

    表  4  28对引物的扩增结果

    Table  4.   Amplicon of 28 primer pairs

    引物组合Primer combination总带数Total bands差异带Difference band基本带Basic bands多态性Polymorphism/ %
    ME2EM13990100.0
    ME4EM442250.0
    ME5EM8880100.0
    ME5EM1398188.89
    ME6EM275271.43
    ME6EM310100100.0
    ME7EM1254180.0
    ME8EM263350.0
    ME10EM2550100.0
    ME10EM332166.67
    ME10EM4330100.0
    ME11EM465183.33
    ME11EM7660100.0
    ME8EM1154180.0
    ME12EM464266.67
    ME13EM185362.5
    ME13EM354180.0
    ME13EM9440100.0
    ME13EM14440100.0
    ME13EM1541325.0
    ME14EM142250.0
    ME14EM364266.67
    ME4EM254180.0
    ME4EM1153260.0
    ME5EM254180.0
    ME8EM476185.71
    ME2EM20550100.0
    ME13EM542250.0
    合计Total15812632
    平均 Mean5.644.51.1477.75
    下载: 导出CSV
  • [1] BAUDOIN J P , ROCHA O , DEGREE J, et al. Ecogeography, demography, diversity and conservation of Phaseolus lunatus L. in the Central Valley of Costa Rica[M]. systematic&ecogeographicstudies on crop genepools, 2004: 1-94.
    [2] 彭葵, 李锦鸿, 李育军, 等. 华南地区利马豆绿色高产栽培技术 [J]. 长江蔬菜, 2020(22):40−42.

    PENG K, LI J H, LI Y J, et al. Green and high-yield cultivation techniques for Lima bean in South China [J]. Journal of Changjiang Vegetables, 2020(22): 40−42.(in Chinese)
    [3] 张德纯. 莱豆史话 [J]. 中国蔬菜, 2009(11):15.

    ZHANG D C. H. Vegetable history of Lima bean [J]. China Vegetables, 2009(11): 15.(in Chinese)
    [4] 郭媛贞, 黄强, 陈芝, 等. 优质莱豆新品种“莆莱1号”的选育 [J]. 福建农业学报, 2014, 29(3):247−249. doi: 10.3969/j.issn.1008-0384.2014.03.010

    GUO Y Z, HUANG Q, CHEN Z, et al. Breeding of qew Lima bean cultivar pulai No. 1 [J]. Fujian Journal of Agricultural Sciences, 2014, 29(3): 247−249.(in Chinese) doi: 10.3969/j.issn.1008-0384.2014.03.010
    [5] 李广昌. 龙岩莱豆生态特性及高产栽培措施 [J]. 吉林蔬菜, 2008(5):8−9. doi: 10.3969/j.issn.1672-0180.2008.05.005

    LI G C. Ecological characteristics and high-yield cultivation measures of Leymus chinensis in Longyan [J]. Jilin Vegetable, 2008(5): 8−9.(in Chinese) doi: 10.3969/j.issn.1672-0180.2008.05.005
    [6] 姜永平, 宋益民, 章洪娟. 南通市地方特色蔬菜洋扁豆设施高效无公害栽培技术 [J]. 现代农业科技, 2013(15):101−102. doi: 10.3969/j.issn.1007-5739.2013.15.064

    JIANG Y P, SONG Y M, ZHANG H J. Efficient and pollution-free cultivation techniques of local vegetable lentils in Nantong city [J]. Xiandai Nongye Keji, 2013(15): 101−102.(in Chinese) doi: 10.3969/j.issn.1007-5739.2013.15.064
    [7] 翁文燊. “香菇豆”的营养成分 [J]. 福建农业科技, 1990(3):43. doi: 10.13651/j.cnki.fjnykj.1990.03.031

    CHEN W S. Nutritional ingredients of Lima bean [J]. Fujian Agricultural Science and Technology, 1990(3): 43.(in Chinese) doi: 10.13651/j.cnki.fjnykj.1990.03.031
    [8] 陈小红, 吴德武, 黎英. 超声波法提取莱豆总黄酮研究 [J]. 长江大学学报(自然科学版), 2014(12):74−76,8.

    CHEN X H, WU D W, LI Y. Study on extraction of total flavonoids from Phaseolus lunatus L. by ultrasonic wave [J]. Journal of Yangtze University (Natural Science Edition), 2014(12): 74−76,8.(in Chinese)
    [9] 雷蕾. 普通菜豆核心种质遗传结构及多样性研究[D]. 北京: 中国农业科学院, 2018.

    LEI L. Study on genetic structure and diversity of common bean core collection[D]. Beijing: Chinese Academy of Agricultural Sciences, 2018. (in Chinese)
    [10] KRUPA U. Main nutritional and antinutritional compounds of bean seeds - a review [J]. Polish Journal of Food and Nutrition Sciences, 2008, 58(2): 149−155.
    [11] ALMEIDA C, PEDROSA-HARAND A. High macro-collinearity between lima bean(Phaseolus lunatus L. ) and the common bean (P. vulgaris L. ) as revealed by comparative cytogenetic mapping [J]. TheorAppl Genet, 2013, 126(7): 1909−1916. doi: 10.1007/s00122-013-2106-9
    [12] WINTER P, KAHL G. Molecular marker technologies for plant improvement [J]. World Journal of Microbiology and Biotechnology, 1995, 11(4): 438−448. doi: 10.1007/BF00364619
    [13] LI G, QUIROS C F. Sequence- related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica [J]. Theoretical and Applied Genetics, 2001, 103(2): 455−461.
    [14] 陈方永, 谢丽雪, 倪海枝, 等. 卵圆型软条白沙枇杷变异种质鉴定研究 [J]. 植物遗传资源学报, 2014, 15(5):986−991. doi: 10.13430/j.cnki.jpgr.2014.05.010

    CHEN F Y, XIE L X, NI H Z, et al. Identification of egg-shaped Ruantiao Baisha loquat mutant germplasm [J]. Journal of Plant Genetic Resources, 2014, 15(5): 986−991.(in Chinese) doi: 10.13430/j.cnki.jpgr.2014.05.010
    [15] 张坤, 周源洁, 李尧, 等. 基于SRAP和SCoT标记的猕猴桃种质遗传多样性分析及变异材料鉴定 [J]. 果树学报, 2021, 38(12):2059−2071. doi: 10.13925/j.cnki.gsxb.20210264

    ZHANG K, ZHOU Y J, LI Y, et al. Genetic diversity analysis of kiwifruit germplasm and identification of variant based on SRAP and SCoT markers [J]. Journal of Fruit Science, 2021, 38(12): 2059−2071.(in Chinese) doi: 10.13925/j.cnki.gsxb.20210264
    [16] 李佳奇, 于卓, 杨东升, 等. 基于SRAP分子标记的冰草遗传连锁图谱构建 [J]. 西北植物学报, 2019, 39(1):76−83. doi: 10.7606/j.issn.1000-4025.2019.01.0076

    LI J Q, YU Z, YANG D S, et al. Construction of genetic linkage map for crested wheatgrass(Agropyron) based on SRAP molecular markers [J]. Acta Botanica Boreali-Occidentalia Sinica, 2019, 39(1): 76−83.(in Chinese) doi: 10.7606/j.issn.1000-4025.2019.01.0076
    [17] 张明飞, 于卓, 于肖夏, 等. 四倍体马铃薯SRAP分子遗传连锁图谱的构建 [J]. 草业学报, 2019, 28(8):190−199. doi: 10.11686/cyxb2019230

    ZHANG M F, YU Z, YU X X, et al. Construction of a genetic linkage map for tetraploid potato based on SRAP markers [J]. Acta Prataculturae Sinica, 2019, 28(8): 190−199.(in Chinese) doi: 10.11686/cyxb2019230
    [18] 张冬菊, 李世超, 吴鹏夫, 等. 基于表型和SRAP标记的切花菊品种遗传多样性分析 [J]. 园艺学报, 2014, 41(1):118−130. doi: 10.3969/j.issn.0513-353X.2014.01.014

    ZHANG D J, LI S C, WU P F, et al. Genetic diversity analysis in cut Chrysanthemum cultivars based on morphology and SRAP markers [J]. Acta Horticulturae Sinica, 2014, 41(1): 118−130.(in Chinese) doi: 10.3969/j.issn.0513-353X.2014.01.014
    [19] 李晋华, 王少铭, 罗莉斯, 等. 基于SRAP标记的生姜种质资源遗传多样性分析 [J]. 分子植物育种, 2021:1−29.

    LI J H, WANG S M, LUO L S, et al. Genetic Diversity of Ginger Germplasm Resources Based on SRAP [J]. Molecular Plant Breeding, 2021: 1−29.(in Chinese)
    [20] 陶爱芬, 魏嘉俊, 刘星, 等. 应用SRAP标记绘制88份南瓜属种质资源DNA指纹图谱 [J]. 植物遗传资源学报, 2017, 18(2):225−232. doi: 10.13430/j.cnki.jpgr.2017.02.008

    TAO A F, WEI J J, LIU X, et al. Construction of molecular fingerprinting map for 88 accessions of Cucurbita by SRAP markers [J]. Journal of Plant Genetic Resources, 2017, 18(2): 225−232.(in Chinese) doi: 10.13430/j.cnki.jpgr.2017.02.008
    [21] 李慧峰, 冉昆, 王涛. 利用SRAP标记构建山东省苹果资源指纹图谱 [J]. 沈阳农业大学学报, 2020, 51(4):470−475.

    LI H F, RAN K, WANG T. Molecular fingerprinting construction of Shandong Malus germplasms based on SRAP markers [J]. Journal of Shenyang Agricultural University, 2020, 51(4): 470−475.(in Chinese)
    [22] 王述民, 张亚芝, 魏淑红. 普通菜豆种质资源描述规范和数据标准[M]. 北京: 中国农业出版社, 2006.
    [23] 刘凯, 陈汉才, 李桂花, 等. 豇豆种质资源遗传多样性和亲缘关系的SRAP和SSR分析 [J]. 中国农学通报, 2014, 30(31):156−163. doi: 10.11924/j.issn.1000-6850.2014-1615

    LIU K, CHEN H C, LI G H, et al. Genetic diversity and phylogenetic relationships analysis of cowpea germplasm resources by SRAP and SSR [J]. Chinese Agricultural Science Bulletin, 2014, 30(31): 156−163.(in Chinese) doi: 10.11924/j.issn.1000-6850.2014-1615
    [24] 张春宝, 邱红梅, 赵洪锟, 等. 东北地区大豆种质遗传多样性的SRAP标记分析 [J]. 大豆科学, 2014, 33(1):17−22. doi: 10.11861/j.issn.1000-9841.2014.01.0017

    ZHANG C B, QIU H M, ZHAO H K, et al. Genetic diversity analysis of soybean germplasm in northeast region of China by SRAP markers [J]. Soybean Science, 2014, 33(1): 17−22.(in Chinese) doi: 10.11861/j.issn.1000-9841.2014.01.0017
    [25] 侯万伟, 张小娟. 蚕豆SRAP标记的建立及遗传多样性分析 [J]. 分子植物育种, 2021, 19(10):3339−3343. doi: 10.13271/j.mpb.019.003339

    HOU W W, ZHANG X J. Establishment and genetic diversity analysis of SRAP markers in Vicia faba [J]. Molecular Plant Breeding, 2021, 19(10): 3339−3343.(in Chinese) doi: 10.13271/j.mpb.019.003339
    [26] 刘明骞, 陈丽君, 丁美美, 等. 基于SRAP分子标记的剑豆遗传多样性分析 [J]. 中国农业大学学报, 2015, 20(2):58−66. doi: 10.11841/j.issn.1007-4333.2015.02.008

    LIU M Q, CHEN L J, DING M M, et al. Genetic diversity of Canavalia ensiformis(L.)DC. accessions revealed by SRAP markers [J]. Journal of China Agricultural University, 2015, 20(2): 58−66.(in Chinese) doi: 10.11841/j.issn.1007-4333.2015.02.008
    [27] MARTINS M, TENREIRO R, OLIVEIRA M M. Genetic relatedness of Portuguese almond cultivars assessed by RAPD and ISSR markers [J]. Plant Cell Reports, 2003, 22(1): 71−78. doi: 10.1007/s00299-003-0659-9
  • 加载中
图(3) / 表(4)
计量
  • 文章访问数:  322
  • HTML全文浏览量:  144
  • PDF下载量:  16
  • 被引次数: 0
出版历程
  • 收稿日期:  2022-09-01
  • 修回日期:  2022-11-21
  • 网络出版日期:  2023-03-28
  • 刊出日期:  2023-02-28

目录

    /

    返回文章
    返回