Cloning and Bioinformatic Analysis of <i>HOS</i>1 Promoter from the 'Tianbao' Banana (<i>Musa acuminata</i>. AAA group)

LIU Wei-hua; LIN Zheng-chun; FENG Xin; LAI Zhong-xiong

doi:10.19303/j.issn.1008-0384.2016.08.006

Volume 31 Issue 8

Oct. 2016

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LIU Wei-hua, LIN Zheng-chun, FENG Xin, LAI Zhong-xiong. Cloning and Bioinformatic Analysis of HOS1 Promoter from the 'Tianbao' Banana (Musa acuminata. AAA group)[J]. Fujian Journal of Agricultural Sciences, 2016, 31(8): 820-825. doi: 10.19303/j.issn.1008-0384.2016.08.006

Citation:

LIU Wei-hua, LIN Zheng-chun, FENG Xin, LAI Zhong-xiong. Cloning and Bioinformatic Analysis of HOS1 Promoter from the 'Tianbao' Banana (Musa acuminata. AAA group)[J]. Fujian Journal of Agricultural Sciences, 2016, 31(8): 820-825. doi: 10.19303/j.issn.1008-0384.2016.08.006

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Cloning and Bioinformatic Analysis of HOS1 Promoter from the 'Tianbao' Banana (Musa acuminata. AAA group)

doi: 10.19303/j.issn.1008-0384.2016.08.006

Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China

Received Date: 2016-05-10
Rev Recd Date: 2016-07-15
Publish Date: 2016-08-01

Abstract

Abstract

In this experiment, HOS1 promoter was cloned successfully from the 'Tianbao' banana, and was further bioinformatically predicted. The analysis results showed that the sequence similarity of HOS1 promoter was 92.43% between the Tianbao banana and the wild banana in Malaysia, and the Tianbao banana promoter contained 35 kinds of cis-elements, including a variety of types of phytohormone response cis-elements and cis-elements concerning abiotic stress, which suggested that there be a close relationship with cold stress response in Tianbao banana. Tianbao banana HOS1 promoter contained two CpG islands, which suggested it should also have a close relationship between cold stress response and methylation in Tianbao banana.
- 'Tianbao'banana (Musa spp., AAA group),
- HOS1,
- promoter,
- cloning,
- bioinformatic analysis

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References(32)

References

[1]	D'HONT A, DENOEUD F, AURY J, et al.The banana (Musa acuminata) genome and the evolution of monocotyledonous plants [J]. Nature, 2012, 488:213-219. doi: 10.1038/nature11241
[2]	李茂富, 李绍鹏, 吴凡, 等.香蕉抗寒性研究进展[J].华南热带农业大学学报, 2005, 11(1): 51-54. http://www.cnki.com.cn/Article/CJFDTOTAL-HNNX200501011.htm
[3]	NELSON SC, PLOETZ RC, KEPLER AK. Musa species (banana and plantain) [C]//In: Elevitch CR(ed.).Species Profiles for Pacific Island Agroforestry, Holualoa (Hawaii): Permanent Agriculture Resources (PAR), 2006:9-22.
[4]	赖钟雄, 陈源, 林玉玲, 等.福州野生蕉(Musa spp., AA Group)的发现及其分类学地位的初步确定[J].亚热带农业研究, 2007, (1):1-5. http://mall.cnki.net/magazine/article/gzzz200701000.htm
[5]	LIU W H, CHENG C Z, LAI G T, et al.Molecular cloning and expression analysis of KIN10 and cold-acclimation related genes in wild banana 'Huanxi' (Musa itinerans) [J]. SpringerPlus, 2015, (4):1-7. https://www.researchgate.net/publication/288917789_Molecular_cloning_and_expression_analysis_of_KIN10_and_cold-acclimation_related_genes_in_wild_banana_'Huanxi'_Musa_itinerans
[6]	刘辉, 李德军, 邓治.植物应答低温胁迫的转录调控网络研究进展[J].中国农业科学, 2014, 47(18): 3523-3533. http://www.cnki.com.cn/Article/CJFDTOTAL-ZNYK201418001.htm
[7]	MIZOI J, SHINOZAKI K, YAMAGUCHI-SHINOZAKI K. AP2/ERF family transcription factors in plant abiotic stress responses[J]. Biochimica Et Biophysica Acta, 2012, 1819(2): 86-96. doi: 10.1016/j.bbagrm.2011.08.004
[8]	LICAUSI F, OHME-TAKAGI M, PERATA P. APETALA2/Ethylene responsive factor (AP2/ERF) transcription factors: Mediators of stress responses and developmental programs[J]. New Phytologist, 2013, 199(3): 639-649. doi: 10.1111/nph.12291
[9]	CHINNUSAMY V, ZHU J, ZHU J K. Cold stress regulation of gene expression in plants[J]. Trends in Plant Science, 2007, 12(10): 444-451. doi: 10.1016/j.tplants.2007.07.002
[10]	CHINNUSAMY V, OHTA M, KANRAR S, et al.ICE1: A regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis[J]. Genes Development, 2003, 17(8): 1043-1054. doi: 10.1101/gad.1077503
[11]	ZHOU M Q, SHEN C, WU L H, et al. CBF-dependent signaling pathway: A key responder to low temperature stress in plants[J]. Critical Reviews in Biotechnology, 2011, 31: 186-192. doi: 10.3109/07388551.2010.505910
[12]	QIN F, SHINOZAKI K, YAMAGUCHI-SHINOZAKI K. Achievements and challenges in understanding plant abiotic stress responses and tolerance[J]. Plant Cell Physiology, 2011, 52: 1569-1582. doi: 10.1093/pcp/pcr106
[13]	DONG CH, AGARWAL M, ZHANG Y, et al.The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1[J]. Proceedings of the National Academy of Sciences, 2006, 103:8281-8286. doi: 10.1073/pnas.0602874103
[14]	SIDDIQUA M, NASSUTH A. Vitis CBF1 and Vitis CBF4 differ in their effect on Arabidopsis abiotic stress tolerance, development and gene expression[J]. Plant Cell Environment, 2011, 34(8): 1345-1359. doi: 10.1111/pce.2011.34.issue-8
[15]	SOLTESZ A, SMEDLEY M, VASHEGYI I, et al.Transgenic barley lines prove the involvement of TaCBF14 and TaCBF15 in the cold acclimation process and in frost tolerance[J]. Journal of Experimental Botany, 2013, 64(7): 1849-1862. doi: 10.1093/jxb/ert050
[16]	冯新, 徐蕾, 赖恭梯, 等.福州野生蕉FeSOD家族基因的克隆及在低温胁迫下的表达分析[J].西北植物学报, 2015, 35(5):0853-0864. http://www.cnki.com.cn/Article/CJFDTOTAL-DNYX201505002.htm
[17]	严寒静, 谈锋.自然降温过程中栀子叶片脱落酸, 赤霉素与低温半致死温度的关系[J].西南师范大学学报, 2001, 26(2): 195-199. http://www.cnki.com.cn/Article/CJFDTOTAL-XNZK200102018.htm
[18]	吴楚, 王政权.脱落酸及其类似物与植物抗寒性之间的关系[J].植物生理学通讯, 2000, 36(6): 562-567. http://www.cnki.com.cn/Article/CJFDTOTAL-ZWSL200006024.htm
[19]	王宇, 王晶英.脱落酸对低温胁迫下水曲柳幼苗叶片抗寒生理指标的影响[J].森林工程, 2010, 26(4): 32-36. http://www.cnki.com.cn/Article/CJFDTOTAL-SSGC201004008.htm
[20]	王文举, 王振平, 平吉成, 等.乙烯利对赤霞珠葡萄几种抗寒性指标的影响[J].中外葡萄与葡萄酒, 2005, (4): 13-14. http://www.cnki.com.cn/Article/CJFDTOTAL-PTZP200505004.htm
[21]	李双龙, 吴代坤, 韩梅.植物DNA甲基化的表观遗传作用研究进展[J].湖北林业科技, 2009, (157): 32-34. http://www.cnki.com.cn/Article/CJFDTOTAL-FBLI200903012.htm
[22]	赵永, 黄凤兰, 温李.植物DNA甲基化的研究进展[J].内蒙古农业科技, 2015, 43(2): 93-96. http://www.cnki.com.cn/Article/CJFDTOTAL-ZNTB201306004.htm
[23]	关录飞, 吴笑女, 徐启江.DNA甲基化及其对植物发育的调控[J].生物技术通讯, 2008, 19(4): 632-634. http://www.cnki.com.cn/Article/CJFDTOTAL-SWTX200804045.htm
[24]	FINNEGAN E J, GENGER R K, KOVAC K, et al.DNA methylation and the promotion of owering by vernalization[J]. Proceedings of the National Academy of Sciences, 1998, 95: 5824-5829. doi: 10.1073/pnas.95.10.5824
[25]	李青芝, 李成伟, 杨同文. DNA甲基化介导的植物逆境应答和胁迫记忆[J].植物生理学报, 2014, 50 (6): 725-734. http://www.cnki.com.cn/Article/CJFDTOTAL-ZWSL201406007.htm
[26]	HASHIDA S N, UCHIYAMA T, MARTIN C, et al.The temperature-dependent change in methylation of the Antirrhinum transposon Tam3 is controlled by the activity of its transposase[J]. Plant Cell, 2006, 18: 104-118. doi: 10.1105/tpc.105.037655
[27]	STEWARD N, KUSANO T, SANO H. Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells[J]. Nucleic Acids Research, 2000, 28: 3250-3259. doi: 10.1093/nar/28.17.3250
[28]	RAHAVI M R, MIGICOVSKY Z, TITOV V, et al.Transgenerational adaption to heavy metal salts in Arabidopsis[J]. Frontiers in Plant Science, 2011, (2): 91. https://www.researchgate.net/profile/Zoe_Migicovsky/publication/225066335_Transgenerational_Adaptation_to_Heavy_Metal_Salts_in_Arabidopsis/links/09e4150be2eebec0ad000000.pdf?inViewer=true&pdfJsDownload=true&disableCoverPage=true&origin=publication_detail
[29]	BOYKO A, BLEVINS T, YAO Y, et al.Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins[J]. PLoS ONE, 2010, (5): e 9514.
[30]	KOVALCHUK O, BURKE P, ARKHIPOV A, et al.Genome hypermethylation in Pinus silvestris of Chernobyl-a mechanism for radiation adaption [J]Mutation Research, 2003, 529: 13-20. doi: 10.1016/S0027-5107(03)00103-9
[31]	MCGINTY RK, KIM J, CHATTERJEE C, et al.Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation[J]. Nature, 2008, 453(7196): 812-816. doi: 10.1038/nature06906
[32]	DARWANTO A, CURTIS MP, SCHRAG M, et al.A modified "cross-talk" between histone H2B Lys-120 ubiquitination and H3 Lys-79 methylation[J]. Journal of Biological Chemistry, 2010, 285(28): 21868-21876. doi: 10.1074/jbc.M110.126813