Transcriptome Sequencing on Six <i>Agaricus bisporus</i> Strains at Four Developmental Stages

SHI Xiao-kun; LU Yuan-ping; CAI Zhi-xin; GUO Zhong-jie; CHEN Mei-yuan; LIAO Jian-hua

doi:10.19303/j.issn.1008-0384.2019.07.004

Volume 34 Issue 7

Jul. 2019

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Article Navigation > Fujian Journal of Agricultural Sciences > 2019 > 34(7): 775-781

SHI Xiao-kun, LU Yuan-ping, CAI Zhi-xin, GUO Zhong-jie, CHEN Mei-yuan, LIAO Jian-hua. Transcriptome Sequencing on Six Agaricus bisporus Strains at Four Developmental Stages[J]. Fujian Journal of Agricultural Sciences, 2019, 34(7): 775-781. doi: 10.19303/j.issn.1008-0384.2019.07.004

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SHI Xiao-kun, LU Yuan-ping, CAI Zhi-xin, GUO Zhong-jie, CHEN Mei-yuan, LIAO Jian-hua. Transcriptome Sequencing on Six Agaricus bisporus Strains at Four Developmental Stages[J]. Fujian Journal of Agricultural Sciences, 2019, 34(7): 775-781. doi: 10.19303/j.issn.1008-0384.2019.07.004

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Transcriptome Sequencing on Six Agaricus bisporus Strains at Four Developmental Stages

doi: 10.19303/j.issn.1008-0384.2019.07.004

The Edible Fungi Institute of Fujian Academy of Agricultural Sciences, National and Local Joint Engineering Research Center for Breeding & Cultivation of Featured Edible Fungi, Fuzhou, Fujian 350014, China

Received Date: 2019-02-12
Rev Recd Date: 2019-05-14
Publish Date: 2019-07-20

Abstract

Abstract

Objective Transcriptome analysis was conducted on Agaricus bisporus at 4 developmental stages to identify the genes associated with and decipher the molecular mechanism involving the fungal development. Method From 6 representative strains of A. bisporus including main cultivar As2796, its parents 02 and 8213, its backcrossing offspring W192, foreign wild strain ARP159, and domestic wild strain AgLH830, at primordium, young, harvesting, and opening stages, 24 fruiting body specimens were collected for transcriptome sequence analysis. By aligning them against the reference genome sequence of A. bisporus, the genes that were differentially expressed were identified. Both unique and common differentially expressed genes (DEGs) were clearly exposed to be annotated using the databases to determine their specific functions. Result Among the 10 660 transcripts obtained, 677 genes were unique with 237 functionally annotated. The tested A. bisporus shared 49 common DEGs between primordium and young stages, 82 between primordium and harvest stages, and 73 between primordium and pileus opening stages. And, 13 genes were found commonly present in the various strains. Conclusion Both unique and common DEGs in A. bisporus at the 4 developmental stages were identified and annotated in the study.
- Agaricus bisporus,
- fruiting body development,
- transcriptome sequencing,
- differentially expressed gene

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References(21)

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