Identification and Bioinformatics of <i>PEBP </i>Family in Hemp

CHEN Han; XU Hongguo; WANG Zhigang; XU Weihui; GE Xiaoqi; QI Hongying

doi:10.19303/j.issn.1008-0384.2022.008.007

Volume 37 Issue 8

Aug. 2022

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Article Navigation > Fujian Journal of Agricultural Sciences > 2022 > 37(8): 1016-1024

CHEN H, XU H G, WANG Z G, et al. Identification and Bioinformatics of PEBP Family in Hemp [J]. Fujian Journal of Agricultural Sciences，2022，37（8）：1016−1024 doi: 10.19303/j.issn.1008-0384.2022.008.007

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CHEN H, XU H G, WANG Z G, et al. Identification and Bioinformatics of PEBP Family in Hemp [J]. Fujian Journal of Agricultural Sciences，2022，37（8）：1016−1024 doi: 10.19303/j.issn.1008-0384.2022.008.007

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Identification and Bioinformatics of PEBP Family in Hemp

doi: 10.19303/j.issn.1008-0384.2022.008.007

CHEN Han^1
,,
XU Hongguo^{1, 2},
WANG Zhigang^{1, 2},
XU Weihui^{1, 2},
GE Xiaoqi¹,
QI Hongying^{1, 2
,
,}

1.
College of Life Sciences, Agriculture and Forestry, Qiqihar University, Qiqihar, Heilongjiang　161006, China
2.
Engineering Research Center of Hemp and Hemp Products in Cold Regions, Ministry of Education, Qiqihar, Heilongjiang　161006, China

Received Date: 2022-03-02
Accepted Date: 2022-03-02
Rev Recd Date: 2022-06-02

Available Online: 2022-08-08

Publish Date: 2022-08-28

Abstract

Abstract

Objective The phosphatidyl ethanolamine binding protein (PEBP) in Cannabis sativa L. (hemp) was identified and bioinformatics of the gene family analyzed. Method Using the PEBP family of arabidopsis as reference, the existing genome data on C. sativa were collected by NCBI, MEME, and TBtools. Result Twelve PEBPs were identified from the database. They were divided into 3 subfamilies as FT-like, TFL-like, and MET-like. These hydrophilic proteins were distributed in cytoplasm and nucleus with the characteristic motif1-motif5 of cannabis PEBP that located on 7 chromosomes. The genes contained 2 exons and more than 2 introns with a promoter containing mainly light-responsive cis-regulatory elements and various hormone cis-regulatory elements. The encoded protein composed basically of random coils. Result Twelve genes in the PEBP family of C. sativa were identified with their potential molecular functions analyzed.
- Cannabis sativa L. (hemp),
- PEBP family,
- functional identification,
- bioinformatics analysis

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References(45)

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