• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

火龙果 HSF 基因家族鉴定及生物信息学分析

Identification and Bioinformatics of Pitaya HSF Family

  • 摘要:
    目的 旨在探究火龙果(Selenicereus spp.) 热激转录因子(Heat shock transcription factors, HSF) 基因家族的生物学特性,为研究火龙果抵抗高温胁迫反应机制提供依据。
    方法 运用多方面生物信息学手段,包括对火龙果 HSF 基因家族进行理化性质、Motif 分析、基因结构分析、基因结构域的预测、染色体定位、启动子分析和系统进化树分析等。此外,还借助转录组数据和qPCR技术分析基因家族各成员在逆境胁迫的表达情况。
    结果 从火龙果基因组中鉴定出 13 个 HSF 基因家族成员。理化性质分析结果表明,其编码的热转录因子均为不稳定蛋白;基因结构分析显示,火龙果 HSF 基因家族大部分成员仅含一个内含子;系统进化树分析结果表明,火龙果 HSF 基因家族根据亲缘关系分为四类,Motif 分析结果也从侧面印证同一分支的基因具有相似或相同的保守基序;HSF 基因家族成员随机分布在火龙果的 6 条染色体中;其启动子中包含激素响应、逆境胁迫、植物生长发育调控和光响应等多种元件;基因结构域预测分析发现,火龙果 HSF 基因家族成员均含有特定的 HSF 结构域;基因表达分析表明,火龙果 HSF 基因的表达具有较强的时间与空间特异性;HSF 基因家族成员在应对高温胁迫反应中,表达趋势不同,表达时间和表达量都不完全相同,但均体现了 HSF 基因对热胁迫的响应。
    结论 初步鉴定并验证了 HSF 基因家族成员参与了火龙果热胁迫反应过程,为进一步探究 HSF 基因家族成员在火龙果高温响应机制上提供参考。

     

    Abstract:
    Objective Biological characteristics of the gene family related to heat shock transcription factors (HSFs) crucial in plant responses to high-temperature stress in pitaya were studied.
    Methods Bioinformatic tools were utilized to analyze the physicochemical properties, motifs, gene structure, domains, chromosome localization, promoters, and phylogenetic tree of the HSF family in Selenicereus spp. Transcriptome and qPCR were employed to determine the gene expressions under heat stress.
    Results Thirteen HSFmembers were identified from the genome. The encoded HSFs were all unstableproteins. Most members contained only one intron belonging to 4 classes ofphylogenetics. The genes in the same branch possessed similar or identicalconserved motifs and were randomly distributed in 6 chromosomes. Theirpromoters contained various elements related to the responses to hormone,stress, and light or plant growth and development regulation. The gene structureconsisted of specific domains with temporally and spatially specific expressions.Under high temperature, all HSFs responded significantly but varied intime and level.
    Conclusion This studyidentified and validated the involvement of HSF family of pitaya inresponse to heat stress.

     

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