• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

170份非洲菊种质资源遗传多样性及亲缘关系分析

Genetic Diversity and Relationship Analysis of Gerbera jamesonii Bolus Germplasm Resources Based on EST-SSR Markers

  • 摘要:
      目的  对170份非洲菊种质资源的遗传多样性及亲缘关系进行研究,为非洲菊种质资源的引进、保护及利用等提供依据。
      方法  采用EST-SSR分子标记,即每对染色体挑选1-3对多态性高、条带清晰的EST-SSR引物,对6个不同群体的170份非洲菊种质资源DNA进行PCR扩增,通过SSR位点、不同群体遗传多样性及UPGMA聚类分析,评估非洲菊不同个体、不同群体间的遗传多样性及亲缘关系。
      结果  筛选出的39对EST-SSR引物共检测出168个等位基因(Na),平均为4.308个,平均Shannon 信息指数(I)为1.098,多态信息含量(PIC)变幅为0.431~0.920,平均为0.760,高于0.5。中国云南群体及混合群体的总等位基因数、总基因型数、平均等位基因数、平均基因型数、平均杂合度均较高,遗传多样性较丰富。6个群体遗传距离为0.016~0.158,平均为0.069,遗传一致度变化范围为0.854~0.984,平均为0.935,中国云南群体与混合群体的遗传距离最小,德国群体与日本群体的遗传距离最大;群体聚类分析结果显示,德国群体和中国云南群体以及混合群体聚为一支,亲缘关系较近。个体聚类结果显示在遗传相似系数0.550处,170份种质资源共分为Ⅰ、Ⅱ、Ⅲ、Ⅳ、Ⅴ、Ⅵ 6大组群,在遗传相似系数0.558处,组群Ⅴ可分为4个亚群,在遗传相似系数0.570处,组群Ⅵ可分为4个亚群,盆栽、卷曲花瓣、球型等具有单一群体来源的类型组群分布较单一,其余类型非洲菊种质分布较为分散。
      结论  筛选的EST-SSR标记多态性高,可应用于非洲菊种质资源的遗传多样性及亲缘关系分析;非洲菊种质资源遗传多样性丰富,不同群体间遗传多样性差异较大,研究结果可为非洲菊种质资源的引进、保护与育种利用等提供重要参考。

     

    Abstract:
      Objective  To reveal the genetic diversity and relationship of 170 germplasm resources of Gerbera jamesonii Bolus in different populations and types, and provide reference for introduction, protection and utilization of gerbera germplasm resources.
      Method  1-3 pairs of EST-SSR primers with high polymorphism and clear bands were selected for each chromosome pair, and 170 gerbera germplasm DNA from 6 different populations were amplified by PCR. SSR polymorphism, genetic differentiation among different populations, genetic uniformity and UPGMA cluster analysis were used to evaluate the genetic diversity and phylogenetic relationships among different individuals and populations of gerbera.
      Results  A total of 168 alleles (Na) were detected in 39 selected EST-SSR primers, with an average number of 4.308, the average Shannon information index (I) was 1.098, and the variation of polymorphism information content (PIC) was 0.431-0.920, with an average of 0.760, which was higher than 0.5. The total allele number, total genotype number, average allele number, average genotype number, and average heterozygosity were higher in population of China Yunnan and mixed population, the genetic diversity was relatively rich. The genetic distance of the six populations ranged from 0.016 to 0.158, with an average of 0.069, and the genetic consistency ranged from 0.854 to 0.984, with an average of 0.935. The genetic distance between China Yunnan population and mixed population was the smallest, and the genetic distance between German population and Japanese population was the largest. The results of population clustering analysis showed that the German population, China Yunnan population and mixed population were clustered into one group, and the relationship was relatively close. The results of individual clustering showed that 170 germplasm resources were divided into 6 groups (I, II, III, IV, V, and VI) at the genetic similarity coefficient of 0.550. At the genetic similarity coefficient of 0.558, group V could be divided into 4 subgroups, and at the genetic similarity coefficient of 0.570, group VI could be divided into 4 subgroups. The distribution of gerbera with single population origin, including types of potting, pasta, bubble, was relatively simple, while the distribution of other gerbera germplasm was relatively dispersed.
      Conclusion  The EST-SSR markers were highly polymorphic and could be used to analyze the genetic diversity and relatives of gerbera germplasm resources. The genetic diversity of gerbera germplasm resources is rich, and the genetic diversity of different populations is quite different. The results of this study could provide important references for the introduction, protection and breeding utilization of gerbera germplasm resources.

     

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